"Show me how to" videos

  • Add reagents
  • Change a test result
  • Choose a test/medium
  • Create a new unknown
  • Declare the ID of a microbe
  • Dispose of cultures
  • Find a previously created unknown
  • Flame lab tools
  • Flame tube mouths
  • Identify gram negative enteric bacilli
  • Identify gram positive cocci
  • Incubate cultures
  • Perform a gram stain
  • Perform aseptic transfers (create lawns)
  • Perform aseptic transfers (tube-to-plate)
  • Perform aseptic transfers (tube-to-tube)
  • Perform video-based tests
  • Record test results
  • Remove and replace caps and lids
  • Repeat a test
  • Select a lab tool
  • Start over with a new unknown
  • Start the incinerator
  • Use a strategy to identify bacteria
  • Use auto-inoculation
  • Use the “traffic signals”
  • Use the identification matrix
  • Use the New Day button
  • View the virtual lab report

Admin tutorial

  • 1) Logging in as an instructor
  • 2) Creating a section
  • 3) Enrolling students in a section
  • 4) Adding activities
  • 5) Viewing student grades
  • 6) Editing gradebook preferences
  • 7) Canvas integration

Antibiotics

  • Bacitracin
  • Chloramphenicol
  • Erythromycin
  • Kanamycin
  • Nalidixic Acid
  • Nitrofurantoin
  • Novobiocin
  • Optochin
  • Penicillin
  • Streptomycin
  • Sulfamethoxazole
  • Tetracycline

Biochemical tests

  • Acid from glucose
  • Adonitol fermentation test
  • Antibiotic susceptibility tests
  • Arabinose fermentation test
  • Arabitol fermentation test
  • Arginine dihydrolase test
  • Bacitracin susceptibility test
  • Catalase test
  • Cellobiose fermentation test
  • Citrate utilization test
  • Coagulase test
  • Deoxyribonuclease (DNase) test
  • Dulcitol fermentation test
  • Esculin hydrolysis test
  • Fructose fermentation test
  • Galactose fermentation test
  • Gas from glucose
  • Gelatin hydrolysis test
  • Glucose fermentation
  • Glycerol fermentation test
  • Growth in KCN (potassium cyanide)
  • Growth on 6.5% NaCl
  • Growth on 7.5% NaCl
  • Growth on bile salts test
  • Hand Hygiene and Infection Control
  • Hemolysis on blood agar
  • Hippurate Hydrolysis Test
  • Hydrogen sulfide (H2S) production test
  • Indole production test
  • Inositol fermentation
  • Kirby-Bauer Antibiotic Susceptibility Test
  • Lactose fermentation test
  • Lipase test (using corn oil)
  • Lysine decarboxylase test
  • Malonate utilization test
  • Maltose fermentation test
  • Mannitol fermentation test
  • Mannose fermentation test
  • Melezitose fermentation test
  • Melibiose fermentation test
  • Methyl red test
  • Motility test
  • myo-Inositol fermentation test
  • Nitrate reductase test
  • Novobiocin susceptibility test
  • OF glucose test
  • Optochin susceptibility test
  • Ornithine decarboxylase test
  • Oxidase test
  • Oxygen Requirements Determination
  • Phenylalanine deaminase test
  • Raffinose fermentation test
  • Rhamnose fermentation test
  • Ribose fermentation test
  • Salicin fermentation test
  • Sorbitol fermentation test
  • Starch hydrolysis test
  • Sucrose fermentation test
  • Trehalose fermentation test
  • Urea hydrolysis test (Christiansen’s)
  • Voges-Proskauer test
  • Xylitol fermentation test
  • Xylose fermentation test

Gram negative bacilli

  • Buttiauxella agrestis
  • Cedecea davisae
  • Cedecea lapagei
  • Cedecea neteri
  • Citrobacter amalonaticus
  • Citrobacter amalonaticus biogroup 1
  • Citrobacter freundii
  • Citrobacter koseri
  • Cronobacter sakazakii
  • Edwardsiella hoshinae
  • Edwardsiella ictaluri
  • Edwardsiella tarda (wild type)
  • Edwardsiella tarda biogroup 1
  • Enterobacter aerogenes
  • Enterobacter amnigenus biogroup 1
  • Enterobacter amnigenus biogroup 2
  • Enterobacter cancerogenus
  • Enterobacter cloacae
  • Enterobacter gergoviae
  • Escherichia coli
  • Escherichia fergusonii
  • Escherichia hermannii
  • Escherichia vulneris
  • Ewingella americana
  • Hafnia alvei
  • Klebsiella oxytoca
  • Klebsiella pneumoniae subspecies ozaenae
  • Klebsiella pneumoniae subspecies pneumoniae
  • Klebsiella pneumoniae subspecies rhinoscleromatis
  • Kluyvera ascorbata
  • Kluyvera intermedia
  • Leclercia adecarboxylata
  • Mollerella wisconsinsis
  • Morganella morganii subspecies morganii
  • Morganella morganii subspecies sibonii
  • Proteus mirabilis
  • Proteus myxofaciens
  • Proteus penneri
  • Proteus vulgaris
  • Providencia alcalifaciens
  • Providencia rettgeri
  • Providencia rustigianii
  • Providencia stuartii
  • Rahnella aquatilis
  • Raoultella ornithinolytica
  • Raoultella terrigena
  • Salmonella bongori
  • Salmonella enterica
  • Salmonella enterica subspecies arizonae
  • Salmonella enterica subspecies enterica
  • Salmonella enterica subspecies houtenae
  • Salmonella enterica subspecies paratyphi
  • Salmonella enterica subspecies salamae
  • Salmonella enteritidis
  • Salmonella montevideo
  • Salmonella newport
  • Salmonella typhi
  • Salmonella typhimurium
  • Serratia ficaria
  • Serratia fonticola
  • Serratia marcescens
  • Serratia odorifera biogroup 1
  • Serratia plymuthica
  • Serratia proteamaculans subspecies proteamaculans
  • Serratia rubidaea
  • Shigella boydii
  • Shigella dysenteriae
  • Shigella flexneri
  • Shigella sonnei
  • Shimwellia blattae
  • Tatumella ptyseos
  • Yersinia enterocolitica
  • Yersinia frederiksenii
  • Yersinia kristensenii
  • Yersinia pestis
  • Yersinia pseudotuberculosis

Gram positive bacilli

  • Bacillus anthracis
  • Bacillus cereus
  • Bacillus licheniformis
  • Bacillus megaterium
  • Bacillus subtilis
  • Bacillus thuringiensis
  • Listeria innocua
  • Listeria ivanovii
  • Listeria monocytogenes
  • Listeria seeligeri

Gram positive cocci

  • Dermacoccus nishinomiyaensis
  • Enterococcus avium
  • Enterococcus faecalis
  • Enterococcus faecium
  • Enterococcus gallinarum
  • Kocuria kristinae
  • Kocuria rosea
  • Kocuria varians
  • Kytococcus sedentarius
  • Lactococcus lactis
  • Lactococcus raffinolactis
  • Macrococcus caseolyticus
  • Micrococcus luteus
  • Micrococcus lylae
  • Nesterenkonia halobia
  • Rothia mucilaginosa
  • Staphylococcus aureus
  • Staphylococcus auricularis
  • Staphylococcus capitis
  • Staphylococcus caprae
  • Staphylococcus carnosus
  • Staphylococcus chromogenes
  • Staphylococcus cohnii ssp. cohnii
  • Staphylococcus cohnii ssp. urealyticum
  • Staphylococcus epidermidis
  • Staphylococcus gallinarum
  • Staphylococcus haemolyticus
  • Staphylococcus hominis
  • Staphylococcus hyicus
  • Staphylococcus intermedius
  • Staphylococcus lentus
  • Staphylococcus saccharolyticus
  • Staphylococcus saprophyticus
  • Staphylococcus sciuri
  • Staphylococcus simulans
  • Staphylococcus warneri
  • Staphylococcus xylosus
  • Streptococcus acidominimus
  • Streptococcus agalactiae
  • Streptococcus bovis
  • Streptococcus criceti
  • Streptococcus equi
  • Streptococcus equinus
  • Streptococcus ferus
  • Streptococcus iniae
  • Streptococcus mutans
  • Streptococcus pneumoniae
  • Streptococcus pyogenes
  • Streptococcus ratti
  • Streptococcus salivarius
  • Streptococcus sanguinis
  • Streptococcus sobrinus
  • Streptococcus uberis

Media

  • 6.5% NaCl broth
  • Arginine dihydrolase broth
  • Bile esculin agar slant
  • Blood agar
  • Christiansen’s urea broth
  • DNase agar with methyl green plate
  • Fluid Thioglycolate
  • Lysine decarboxylase broth
  • Malonate broth
  • Mannitol salt agar
  • MRVP broth
  • Mueller Hinton Agar
  • Nitrate broth with Durham tube
  • Nutrient agar plate
  • Nutrient broth
  • Nutrient gelatin
  • OF glucose broth
  • Ornithine decarboxylase broth
  • Phenol red adonitol broth
  • Phenol red arabinose broth
  • Phenol red arabitol broth
  • Phenol red cellobiose broth
  • Phenol red dulcitol broth
  • Phenol red fructose (levulose) broth
  • Phenol red galactose broth
  • Phenol red glucose (dextrose) broth with Durham tube
  • Phenol red glycerol broth
  • Phenol red inositol broth
  • Phenol red lactose broth
  • Phenol red maltose broth
  • Phenol red mannitol broth
  • Phenol red mannose broth
  • Phenol red melezitose broth
  • Phenol red melibiose broth
  • Phenol red raffinose broth
  • Phenol red rhamnose broth
  • Phenol red ribose broth
  • Phenol red salicin broth
  • Phenol red sorbitol broth
  • Phenol red sucrose (saccharose) broth
  • Phenol red trehalose broth
  • Phenol red xylitol broth
  • Phenol red xylose broth
  • Phenylalanine agar slant
  • Potassium cyanide (KCN) broth
  • Rabbit plasma
  • Simmons’ citrate agar slant
  • Sodium Hippurate Medium
  • Spirit blue agar plate
  • Starch agar
  • Triple sugar iron agar slant
  • Tryptone broth

Quick start tutorial

  • Creating a user account
  • Lab layout
  • Navigating VUMIE’s main features
  • Sections, Activities, and Quizzes

Reagents, Chemicals, Stains

  • Ammonium Sulfate (saturated)
  • Barritt’s A reagent
  • Barritt’s B reagent
  • Crystal Violet
  • Ferric chloride (10%) reagent
  • Gram’s Decolorizer
  • Gram’s Iodine
  • HCl 0.1N reagent
  • Hydrogen peroxide
  • Iodine reagent
  • Kovac’s reagent
  • Malachite Green
  • Methyl red reagent
  • Ninhydrin
  • Nitrate A reagent
  • Nitrate B reagent
  • Oxidase reagent
  • Rabbit Plasma
  • Safranine

Spiral and Curved Bacteria

  • Campylobacter coli
  • Campylobacter fetus
  • Campylobacter jejuni
  • Campylobacter lari
  • Campylobacter mucosalis
  • Vibrio cholerae
  • Vibrio fluvialis
  • Vibrio mimicus
  • Vibrio parahaemolyticus
  • Vibrio vulnificus

Oxygen Requirements Determination

About this test

What is the purpose of this test?

The purpose is to see how varying levels of oxygen impact the growth of the unknown microbe.

How are oxygen requirements determined?

Bacteria vary greatly in their need for oxygen to support growth.  Aerobic species of bacteria require atmospheric levels of oxygen for growth while anaerobes are killed by attempted growth in oxygen.  Some species only tolerate specific intermediate levels of oxygen in their growth environment, and do not grow well at either the top of the medium or the butt of the tube.  

A medium is used that contains chemicals creating aerobic conditions at the surface and anaerobic conditions in the butt, with varying levels of oxygen found between the two extremes.  The unknown is then inoculated into in the medium, and the pattern of growth observed after incubation reveals the impact of oxygen levels on growth.

What medium is used?

The medium used in VUMIE Online for determination of oxygen requirements is fluid thioglycolate broth. This is an agar-thickened broth that features chemicals supporting formation of a gradient of oxygen with full oxygen levels at the surface and oxygen-free levels in the butt of the tube.

How is the test performed?

The medium is inoculated with a pure culture of the unknown organism and incubated overnight.  The location in the broth where growth is found indicates the oxygen requirements for the unknown organism. 

What reagents are added?

None

Performing this test in the VUMIE Online lab.

Inoculation of the Medium

Complete the process of a tube-to-tube aseptic transfer to inoculate the medium.  Forgotten how to do these things?  Watch the “Show Me How To” videos.

Incubation of the Inoculated Medium

Place the inoculated tube into the 35-37 C.

Press the New Day button to move forward 24 hours.  Forgotten how to do these things?  Watch the “Show Me How To” videos.

Determination of Results

Incubate this test for only 24 hours. 

Retrieve the incubated culture from the incubator.

No reagents are required for completion of this test.

Results will conform to one of these four growth patterns:

  • Strict aerobic growth (also known as “obligate” aerobic growth).  Turbidity is seen at the top of the tube but NOT at the bottom.
  • Strict anaerobic growth.  Turbidity is seen only at the bottom of the tube.
  • Facultatively anaerobic growth.  This is the pattern seen for those bacteria that can grow with or without oxygen.  Turbidity is seen throughout the tube.
  • Microaerophilic growth.  Some bacteria cannot grow with unlimited oxygen or without oxygen, needing a modest amount of oxygen.  A thin band of turbidity is seen below the top of the medium and above the bottom of the tube.

Record your test result.  Forgotten how to do these things?  Watch the “Show Me How To” videos.

Updated on October 4, 2024

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